My chime-in....
I
absolutely agree with using the piston manufacturer's clearance specs, but I define clearance slightly differently, therefore preferring the tighter/smaller clearance specs...
Except for that and exact terminology (see Jim's quote), I defer to Jim's vast experience with engine building....
For scratches all I'm seeing are a couple minor diagonals which are probably from the 3 stone honing tool.
.002" gauges on either side mean there's .004" piston to cylinder clearance, sounds like way out of spec.
In order to fully explain, let me describe how I define clearance, and how I would use "feelers" to verify fitment.....
For this example let's say the clearance specs are .0004" to .0020".....(Pretty much Honda's standard specs)...
balbearian's pic shows two .002" feelers on opposite sides, so he is already at max spec....
I cut my feelers/shim-stock into three 1/8" wide strips and place them 120 degrees apart, but the result would be the same: .0020" CLEARANCE all around the centered piston...Right at max spec....
To me, this NEEDS oversize pistons and bored...
My thought terminology varies in that the mentioned .004" that Jim calls clearance, I call piston to bore difference....
This is always twice my clearance spec as the piston must have that clearance all around....(cross-sectionally on both sides)
However, I would be having this bored for a .0010"
difference (.0005"
clearance) on the new/oversize pistons, (close to Honda's minimum .0004" spec)....
NOT saying my terminology is correct, just how I approach it.....Fortunately, my machinist understands how and what I'm saying......