Let's get into the part almost everyone hates... cleaning gasket surfaces. The base gasket surface will likely be annoying. So start off by removing the crank holder, crank, and balancer chain assembly. Since I did this early there are no pictures of this. Be mindful of dowel pins as well.
Now you have to remove the transmission. This is very easy. Start by removing the actual gear assembly. Located in the rear, the same shaft that holds the sprocket. The the other shaft for the torque convert. Be careful, there are 2 dowel pins and an bearing oil hole pin. Honda calls the dowel pins, "Gearshift fork guide pin" and the oil hole pin "Bearing setting pin".
There is one dowel pin, on the torque converter cover side for the transmission shaft.
There's a second dowel pin, for the torque converter shaft, also located on the torque converter cover side.
The bearing oil hole pin is for the torque converter shaft and is located on the inside of the crank case.
Now on to the actual prep, flip the case upside down and remove the oil jets. What I did was spray carb cleaner in that area then used Jim's method of two small flatheads. They lifted up pretty easy. You'll only be able to get it so far then you have to use your fingers while still applying pressure on one side of the oil jet with the screwdriver to get it out. No pictures of this, I only have two hands.
The case as-is.
I spray carb cleaner on the gasket, then use a razor blade to get as much off as possible. You won't get it all. Then per Jim's and Mike's advice I use a red oil stone (equivalent to 320 grit) with some honing oil. I ran out part way and used 3-in-1/SAE20 oil and it worked fine. I'll bet you could use two-stroke oil too if that's all you have.
When using the stone make sure to you're not getting a lot of debris in the oil passageways. After you use the stone for about 15-30 seconds it will start smearing, indicated you need to wipe everything off with a towel, oil the stone and go again. When you do this wipe any crud that gets in that passageway. I use some carb cleaner in that area as well and also on the old gasket where the razor blade isn't helping. The carb cleaner does dissolve some of it. Also spray in the passage way to verify flow every so often. It will come out where the plain bearing is located underneath it.
One side done, took about 15-20 minutes.
Other side, man this is boring!
All done, cleaned off with carb cleaner and oil flow verified with the carb cleaner.
Reinstalling the transmission is easy, reverse of assembly of course. Don't forget the two pins on the outside and the bearing oil pin on the inside. Make sure the shaft, bearings, and gears are clean of any old debris. I used a small amount of assembly lube on the bearings and gears. To help you find the alignment holes there are marks on the shafts.
Put the torque converter shaft in first, then the transmission gear shaft in. Line it all up and then spin the sprocket a few rotations. Make sure it's spinning the torque converter shaft. If it spins so far then stops check for debris on the gears. It should spin freely and easily forwards and backwards.